FlexiFDR Crack With Product Key [32|64bit] [Latest]

FlexiFDR is a simple command line application that can help you determine the FDR (false discovery) rate for MassWiz search results.
FlexiFDR uses the target and the decoy files generated by MassWiz as input files and calculates the FDR rate, for both concatenated or separate strategies.

 

 

 

 

 

 

FlexiFDR Crack + For Windows

The following parameters can be specified in the command line.
–csv1:
The “Transparent Bounding Box” output in FlexiFDR, as listed
by the “Criteria” tab of the search results summary page in MassWiz.
Note: it is assumed that the first line of the csv file is a header
line.
–csv2:
The “Transparent Bounding Box” output in FlexiFDR, as listed
by the “Decoy” tab of the search results summary page in MassWiz.
Note: it is assumed that the first line of the csv file is a header
line.
–csv3:
The “Brief List” output in FlexiFDR, as listed in MassWiz.
It is assumed that the first line of the csv file is a header line.
If the number of items in the Brief List exceeds the total number of
items in the Transparent Bounding Box, blank lines are added to
fill up the csv file.
–folderpath:
path to the folder where generated files are saved
–ignoreparamters:
avoid showing the parameter dialog for massWiz search
–parameters:
specify any massWiz parameter needed for the search.
–column1:
specify which massWiz parameter you want to check for FDR
–column2:
specify which massWiz parameter you want to check for FDR
–column3:
specify which massWiz parameter you want to check for FDR
–column4:
specify which massWiz parameter you want to check for FDR
–decoy:
specify the folder that contains the decoy files
–fdr:
specify the FDR value you want to find
–basename:
specify the basename of the search results file, which is the
same basename as the basename of the “Decoy” file generated by
MassWiz. The decoy file name appears as the basename of the
search results file.

So, please refer the post “Fix the false-discovery rate problem and what’s wrong with massWiz/FDR” and “3 problems in masswiz – searx: masking, DSN filtering and FDR” to find out:

1. Concatenation of strategies and their FDRs are different from separate strategies and their FDR

FlexiFDR Crack + Full Version

FlexiFDR Serial Key is a command line application for use with the MassWiz-based FDR tool MassProfilerPro.
FlexiFDR Crack Mac can:
– Calculate the FDR for both concatenated and separate strategies,
– Calculate the FDR for up to 30 results per protein, using the default FDR cut-off of 0.1,
– Calculate the FDR using the level 3, level 4, and level 5 matches of a search result (default is level 5),
– Convert the results from a text file to a pepXML file,
– Convert the results from a pepXML file to a text file,
– Help you to determine the FDR of a search result in case a submission of the FDR calculation is not already completed.

Read the FlexiFDR Sourceforge repository for download instructions, documentation, and sample files.
This application was developed and/or contributed by the
MassWiz Development Team.

Contribute to FlexiFDR

The FlexiFDR source code is a project of the University of Dundee under the terms of the GNU General Public Licence (GPLv2).

For contribution instructions and to download source files, visit the project page.
To provide feedback and report bugs, use the reportbug -s flexifdr package, which can be installed by running the following in the FlexiFDR sources:

download -i -d flexifdr-1.0-2.x.xx

Revisions

Source repository:

Release date:

2001-07-28

Download instructions:

You can download source or binary packages from:

Differences between 0.8.1 and 0.8.0

FlexiFDR was updated to a new binary version that is based on the most recent changes in MassWiz library.

In this release FlexiFDR contains a bug fix for a situation, where the FDR calculation was not being updated when multiple search results are reported, instead of the selected FDR cut-off. Another bug fix has been made for cases, where the FDR calculation for a search result is not being updated to the new FDR cut-off if one is selected.

FDR calculations with one or more FDR cut-offs are still not available.

P4 compatibility
2f7fe94e24

FlexiFDR With Key

===========
MassWiz ( is a powerful, yet easy to use, tools for searching and identifying peptides. The program is written in Java and uses the Mascot and PeptideShaker/PeptideSeeker/X!Tandem search engines for the detection of peptides.
FlexiFDR version 0.1 introduces a novel way to calculate FDR by using the target and decoy files generated by MassWiz.
FlexiFDR now includes the –concat strategy as an option. However, peptides identified by the separate strategy are not used for FDR calculation. This new command line application is written in a simple and portable way in Java.
Usage:
=====
java -cp.:/home/rich/flexifdr.jar -Djava.library.path=/usr/lib/jni:/home/rich/libfdr.so rfdrmass4d_demo.FlexiFDR
1. To calculate FDR for concatenated search results:
./FlexiFDR -i sample1.txt -d sample2.txt -o output.txt –concat
2. To calculate FDR for separate search results:
./FlexiFDR -i sample1.txt -d sample2.txt -o output.txt –concat –separate –no-pss
3. To calculate FDR for concatenated search results using the ‘-O’ option:
./FlexiFDR -i sample1.txt -d sample2.txt -o output.txt –concat -O
Note: The ‘-O’ option works only for concatenated search results.
4. To calculate FDR for concatenated search results using the ‘-r’ option:
./FlexiFDR -i sample1.txt -d sample2.txt -o output.txt –concat -r
Note: The ‘-r’ option works only for concatenated search results.
5. To calculate FDR for separate search results using the ‘-s’ option:
./FlexiFDR -i sample1.txt -d sample2.txt -o output.txt –concat -s
6. To calculate FDR for separate search results using the ‘-S’ option:
./FlexiFDR -i sample1.txt -d

What’s New In?

Mainly intended for use in cases where there is a need to understand the FDR rate across all data types for a given search.
FlexiFDR can also be used to get the FDR of individual files across all files types.
FlexiFDR has the following features:
=================
FlexiFDR can be used on Microsoft Windows, Linux (KaliLinux, Ubuntu, etc.) and Mac OS X operating systems.
It does not require any special permissions to install and does not require root (superuser) access.
You can easily remove it after use by using the Uninstall button (see below).
It supports two different search strategies (concatenated and separate) and uses two sets of data (target and decoy).
FlexiFDR is based on the FDR calculation described in the paper:
Longman-Parker_2005. This is the paper that MassWiz and FlexiFDR are based on.
As FlexiFDR is based on an older version of the paper, there is a chance that the FlexiFDR results differ from the results based on the current version.
A tool for getting the FDR of individual files (similar to FlexiFDR) is available, it is called FlexifDR.
It is located here:
Usage:
=========================================
Run the FlexiFDR application with the following command line:
./FlexiFDR -i inputfiles.txt -t target_files.txt -d decoy_files.txt

-i: input file, contains the output file names from MassWiz
-t: the file that contains the list of target proteins
-d: the file that contains the list of decoy proteins

To get the FDR rate of a given target, e.g. protein A, you can use:
./FlexiFDR -i output_file.txt -t a.fasta -d d.fasta -p 0.01

Where:
-i: input file, contains the target proteins
-t: file that contains the list of target proteins
-d: file that contains the list of decoy proteins
-p: the FDR rate for this protein

If you want to know the FDR rate for all proteins you can use:
./FlexiFDR -i output_file.

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System Requirements For FlexiFDR:

Minimum system requirements are as follows:
2.0 GHz Processor
2GB of RAM (4GB recommended)
Windows XP/Vista/7/8/8.1/10 (32 or 64 bit)
Hard Disk Space: 5.0 GB
The user will have the following screens after installation:
Auto Screenshot
Easy Screenshot
Taking screen shots is very easy, simple, and quick. Just press your Windows key + Print Screen key and you will get a quick screenshot of your desktop or any

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